|
Gromacs command line option |
Gromita button |
|
-f |
Input |
|
-o |
Output |
|
-s |
Topology file |
|
-n |
Index file |
|
-fr |
Index file |
|
-sub |
Index file |
|
-drop |
xvgr/xmgr file |
|
-h |
Gromacs Help |
|
-nice |
Set nice level |
|
-b |
First frame |
|
-e |
Last frame |
|
-tu |
Time unit |
|
-w |
view output files |
|
-xvgr |
xmgrace output |
|
-skip |
Skip |
|
-dt |
Write frame |
|
-dump |
Dump frame |
|
-t0 |
Starting time |
|
-timestep |
Time step |
|
-pbc |
PBC treatment |
|
-ur |
Unit cell |
|
-center |
Center atoms |
|
-box |
Box size |
|
-shift |
Shift |
|
-fit |
Fit molecule |
|
-ndec |
Precision |
|
-vel |
Velocities |
|
-force |
Forces |
|
-trunc |
Truncate |
|
-exec |
Execute |
|
-app |
Append output |
|
-split |
Split |
|
-sep |
Separate Frames |
|
-ter |
PDF end of frame |
|
-dropunder |
Drop frames under |
|
-dropover |
Drop frames above |
|
-trans |
Translate coordinates |
|
-nzero |
Number of zeroes in file names |
|
-quiet |
Quiet |