|
Gromacs command line option |
Gromita button |
|
-f |
Input |
|
-o |
Gromacs formated Output |
|
-p |
Topology output |
|
-i |
include file |
|
-n |
Index file |
|
-q |
Clean file |
|
-h |
Gromacs help |
|
-nice |
Set nice level |
|
-merge |
merge chains |
|
-ff |
Force field |
|
-water |
Water model |
|
-inter |
interactive |
|
-ss |
SS bridges |
|
-ter |
Termini |
|
-lys |
Lysine |
|
-asp |
Aspartic Acid |
|
-glu |
Glutamic Acid |
|
-his |
Histidine |
|
-angle |
Angle |
|
-dist |
Distance |
|
-una |
United CH atoms |
|
-ignh |
Ignore hydrogens |
|
-missing |
Ignore missing atoms |
|
-v |
Verbose |
|
-posrefc |
Constant |
|
-vsite |
Convert |
|
-heavyh |
Make heavy |
|
-deuterate |
Deuterate |
|
-arg |
Arginine selection |
|
-gln |
Glutamine selection |
|
-quiet |
Quiet |