|
Gromacs command line option |
Gromita button |
|
-f |
Input |
|
-n |
Index file |
|
-o |
Output |
|
-mead |
mead |
|
-bf |
Add b factors |
|
-h |
Gromacs help |
|
-nice |
Set nice level |
|
-w |
view output files |
|
-ndef |
Choose output |
|
-bt |
Box type |
|
-box |
Box |
|
-angles |
Angles |
|
-d |
Distance |
|
-c |
Center molecule |
|
-center |
Geometrical Center |
|
-translate |
Translation |
|
-rotate |
Rotate |
|
-princ |
Orient |
|
-scale |
Scaling |
|
-density |
Box density |
|
-pbc |
Remove periodicity |
|
-grasp |
Grasp |
|
-rvdw |
Default VdW radius |
|
-sig56 |
VdW potential minimum |
|
-vdwread |
read VdW |
|
-atom |
Atom |
|
-legent |
Legent |
|
-label |
Add chain label |
|
-quiet |
Quiet |